STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111217549Fibrinogen C-terminal domain-containing protein. (269 aa)    
Predicted Functional Partners:
ENSSDUP00000016974
Uncharacterized protein.
 
 
 
  0.872
fbln5
Fibulin 5.
   
 0.547
ENSSDUP00000013582
Microfibril associated protein 5.
   
 
 0.501
ENSSDUP00000011831
Microfibril associated protein 2.
   
 
 0.492
ENSSDUP00000011840
Uncharacterized protein.
   
 
 0.492
fam20b
FAM20B glycosaminoglycan xylosylkinase.
  
  
 0.417
EFEMP1
EGF containing fibulin extracellular matrix protein 1.
   
 0.417
efemp2
EGF containing fibulin extracellular matrix protein 2a.
   
 0.417
LOC111237593
Uncharacterized protein.
   
 0.417
kansl2
KAT8 regulatory NSL complex subunit 2.
    
 0.406
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.