STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nedd4lNEDD4 like E3 ubiquitin protein ligase. (1277 aa)    
Predicted Functional Partners:
nedd4
E3 ubiquitin-protein ligase.
  
  
 
0.901
rps27a
Ribosomal protein S27a.
    
 0.868
arrdc3
Arrestin domain containing 3a.
    
 
 0.817
egfr
Receptor protein-tyrosine kinase.
   
 0.804
LOC111237405
Receptor protein-tyrosine kinase.
   
 0.804
LOC111237647
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
    
 0.792
ubb
Uncharacterized protein.
    
 0.746
ubc
Uncharacterized protein.
    
 0.746
LOC111228731
Tyrosine-protein kinase receptor.
   
 0.732
LOC111228088
Mothers against decapentaplegic homolog.
    
 0.707
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.