STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000022629SPARC-like 2. (218 aa)    
Predicted Functional Partners:
lum
Lumican.
   
  
 0.852
dcn
Decorin; May affect the rate of fibrils formation.
   
  
 0.727
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
     
 0.589
ENSSDUP00000015914
Uncharacterized protein.
     
 0.558
ENSSDUP00000015987
Uncharacterized protein.
     
 0.558
stab1
Stabilin 1.
     
 0.558
ENSSDUP00000002544
Uncharacterized protein.
      
 0.536
LOC111231400
Odontogenic, ameloblast associated.
      
 0.533
fam20b
FAM20B glycosaminoglycan xylosylkinase.
     
 0.496
LOC111236873
Vitellogenin domain-containing protein.
   
 
  0.495
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.