STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cramp1Cramped chromatin regulator homolog 1. (1179 aa)    
Predicted Functional Partners:
LOC111234091
Uncharacterized protein.
   
 
 0.684
crym
Crystallin, mu.
      
 0.599
jpt2
Jupiter microtubule associated homolog 2.
      
 0.573
mtrex
Mtr4 exosome RNA helicase.
   
  
 0.566
LOC111230260
Family with sequence similarity 173 member A.
      
 0.533
LOC111239115
Nuclear protein, ataxia-telangiectasia locus.
    
 
 0.522
LOC111228176
Nuclear receptor subfamily 0, group B, member 2b.
    
 
 0.489
nr0b2
Nuclear receptor subfamily 0, group B, member 2a.
    
 
 0.489
sdr42e2
Short chain dehydrogenase/reductase family 42E, member 2.
      
 0.482
tsr3
Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.
      
 0.477
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.