STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111231708Ankyrin repeat and SOCS box containing 2a, tandem duplicate 1. (654 aa)    
Predicted Functional Partners:
LOC111216894
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.687
CUL5
Cullin 5; Belongs to the cullin family.
    
 0.687
rnf7
Ring finger protein 7.
    
 0.675
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.608
asb6
Ankyrin repeat and SOCS box containing 6.
  
  
 0.561
asb12
Ankyrin repeat and SOCS box-containing 12b.
  
 
0.537
commd8
COMM domain containing 8.
   
  0.535
commd1
Copper metabolism (Murr1) domain containing 1.
    
  0.524
LOC111228608
COMM domain containing 4.
    
 0.520
asb1
Ankyrin repeat and SOCS box containing 1.
  
  
0.519
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.