STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdf1Keratinocyte differentiation factor 1a. (371 aa)    
Predicted Functional Partners:
ripk4
Receptor-interacting serine-threonine kinase 4.
   
 
 0.584
fam83h
Family with sequence similarity 83 member Hb.
  
     0.459
rab25
RAB25, member RAS oncogene family b.
   
  
 0.432
LOC111223021
RAB25, member RAS oncogene family a.
   
  
 0.432
ENSSDUP00000008412
Uncharacterized protein.
  
     0.425
lrp10
Low density lipoprotein receptor-related protein 10.
  
     0.422
rif1
Replication timing regulatory factor 1.
    
 
 0.422
ENSSDUP00000018937
Uncharacterized protein.
   
  
 0.408
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.