STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zfhx3Zinc finger homeobox 3. (3862 aa)    
Predicted Functional Partners:
LOC111225344
Runt-related transcription factor.
     
 0.606
LOC111216899
Transforming growth factor beta; Belongs to the TGF-beta family.
    
  0.599
runx2
Runt-related transcription factor.
     
 0.599
LOC111232758
Runt-related transcription factor.
     
 0.599
LOC111223901
Runt domain-containing protein.
     
 0.545
LOC111232588
Mediator complex subunit 12.
      
 0.438
paxip1
PAX interacting (with transcription-activation domain) protein 1.
      
 0.437
LOC111226164
Ataxin 3.
      
 0.435
cux2
Homeobox protein cut-like.
   
  
 0.430
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.