STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam50aFamily with sequence similarity 50 member A. (331 aa)    
Predicted Functional Partners:
slu7
SLU7 homolog, splicing factor.
   
 
  0.917
alyref
Aly/REF export factor.
   
  0.873
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 
  0.863
cunh9orf78
Zgc:103692.
    
 0.858
nkap
NFKB activating protein.
   
 
  0.855
fam32a
Family with sequence similarity 32 member A.
    
  0.843
Prkrip1
PRKR interacting protein 1.
   
 
 0.842
ccdc12
Coiled-coil domain containing 12.
     
 0.840
cwc22
CWC22 spliceosome associated protein homolog.
    
  0.840
sde2
SDE2 telomere maintenance homolog (S. pombe).
     
 0.669
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.