STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111226036Sema domain-containing protein; Belongs to the semaphorin family. (753 aa)    
Predicted Functional Partners:
LOC111221308
Plexin b1a.
    
0.679
LOC111221708
Plexin b1b.
    
0.679
LOC111225043
Plexin b2a.
    
 0.679
LOC111235431
Plexin B3.
    
0.679
plxnb2
Plexin b2b.
    
 0.679
LOC111221167
Protein tyrosine phosphatase receptor type C.
    
 0.671
mst1r
Macrophage stimulating 1 receptor b.
    
 0.642
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.642
LOC111222844
Macrophage stimulating 1 receptor a.
    
 0.642
ENSSDUP00000019293
Plexin_cytopl domain-containing protein.
    
 0.523
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.