STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111238063Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (460 aa)    
Predicted Functional Partners:
LOC111238835
GABA(A) receptor-associated protein like 2.
  
 0.983
LOC111230109
Zgc:92606.
  
 0.981
gabarap
GABA(A) receptor-associated protein b.
   
 0.979
GABARAPL2
GABA type A receptor associated protein like 2.
  
 0.841
MAP1LC3A
Microtubule-associated protein 1 light chain 3 alpha.
   
 0.792
LOC111225231
Microtubule-associated protein 1 light chain 3 beta.
   
 0.792
LOC111232381
Microtubule-associated protein 1 light chain 3 gamma, like.
   
 0.781
map1lc3c
Microtubule-associated protein 1 light chain 3 gamma.
   
 0.781
ulk1
Unc-51 like autophagy activating kinase 1.
   
 
 0.671
ulk2
Unc-51 like autophagy activating kinase 2.
   
 
 0.671
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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