STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vkorc1l1Vitamin K epoxide reductase complex, subunit 1-like 1. (186 aa)    
Predicted Functional Partners:
ggcx
Gamma-glutamyl carboxylase.
     
 0.925
NQO1
NAD(P)H quinone dehydrogenase 1.
     
 0.918
LOC111224210
Flavodoxin_2 domain-containing protein.
     
 0.918
LOC111220323
Vitamin K epoxide reductase complex, subunit 1.
  
  
 
0.903
trpt1
tRNA phosphotransferase 1.
   
  
 0.533
thyn1
Thymocyte nuclear protein 1.
      
 0.465
pros1
Protein S.
   
  
 0.429
mgp
Gla domain-containing protein.
      
 0.416
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.