STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmgxb4HMG box domain containing 4a. (597 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
    
 
 0.603
mcf2
MCF.2 cell line derived transforming sequence a.
      
 0.600
foxred2
FAD-dependent oxidoreductase domain containing 2.
      
 0.590
ccar1
Cell division cycle and apoptosis regulator 1.
      
 0.588
mcm5
DNA helicase; Belongs to the MCM family.
      
 0.560
ENSSDUP00000027616
Zgc:158328.
      
 0.538
cunh17orf49
Zgc:103508.
    
 
 0.517
LOC111217041
MCF.2 cell line derived transforming sequence b.
      
 0.468
ints8
Integrator complex subunit 8.
      
 0.465
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
    
 
 0.445
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.