STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSDUP00000024103Serine/arginine repetitive matrix 4. (446 aa)    
Predicted Functional Partners:
slc26a5
Solute carrier family 26 member 5.
      
 0.606
mex3b
Mex-3 RNA binding family member B.
    
 0.602
LOC111221225
Transmembrane channel-like protein.
    
 0.559
TMC1
Transmembrane channel-like protein.
    
 0.559
wfs1
Wolfram syndrome 1b (wolframin).
      
 0.509
LOC111231387
Wolfram syndrome 1a (wolframin).
      
 0.509
ush2a
Usher syndrome 2A (autosomal recessive, mild).
      
 0.502
LOC111240293
Myosin VIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.489
MYO6
Myosin VI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.489
cmtr1
Cap methyltransferase 1.
      
 0.480
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.