STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111227970PPP1R35_C domain-containing protein. (279 aa)    
Predicted Functional Partners:
rttn
Rotatin.
      
 0.650
pdxdc1
Pyridoxal-dependent decarboxylase domain containing 1.
      
 0.606
stil
STIL centriolar assembly protein.
      
 0.586
tatdn2
TatD DNase domain containing 2.
      
 0.530
bahd1
Bromo adjacent homology domain containing 1.
      
 0.530
ENSSDUP00000003809
Uncharacterized protein.
      
 0.506
mboat4
Membrane bound O-acyltransferase domain containing 4; Belongs to the membrane-bound acyltransferase family.
      
 0.506
LOC111216300
BAH domain-containing protein.
      
 0.477
ccdc9
Coiled-coil domain containing 9.
      
 0.469
arl13b
ADP-ribosylation factor-like 13b.
      
 0.465
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.