STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111225043Plexin b2a. (1868 aa)    
Predicted Functional Partners:
LOC111232015
Si:ch211-129c21.1; Belongs to the semaphorin family.
    
 0.679
LOC111228850
Semaphorin 4e; Belongs to the semaphorin family.
    
0.679
SEMA4D
Semaphorin 4D; Belongs to the semaphorin family.
    
 0.679
LOC111226036
Sema domain-containing protein; Belongs to the semaphorin family.
    
 0.679
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.647
sema5b
Sema domain-containing protein.
    
 0.596
LOC111221027
Sema domain-containing protein.
    
0.596
LOC111239929
Sema domain-containing protein.
    
0.596
rnd3
Rho family GTPase 3a.
    
 0.587
LOC111219083
Rho family GTPase 1b.
    
 0.587
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.