smg7 protein (Seriola dumerili) - STRING interaction network

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Known Interactions

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Predicted Interactions

gene neighborhood

gene fusions

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textmining

co-expression

protein homology

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[Homology]

Score

smg7

SMG7 nonsense mediated mRNA decay factor. (1153 aa)

Predicted Functional Partners:

smg1

0.982

smg5

0.968

rbm8a

0.957

smg6

0.952

UPF1

0.922

LOC111228938

0.922

upf3b

0.895

smg9

0.850

upf3a

0.846

smg8

0.841

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111228938	UPF1	ENSSDUP00000018286	ENSSDUP00000013281	Uncharacterized protein.	UPF1 RNA helicase and ATPase.	0.900
LOC111228938	rbm8a	ENSSDUP00000018286	ENSSDUP00000008075	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.950
LOC111228938	smg1	ENSSDUP00000018286	ENSSDUP00000025222	Uncharacterized protein.	SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.	0.993
LOC111228938	smg5	ENSSDUP00000018286	ENSSDUP00000009727	Uncharacterized protein.	SMG5 nonsense mediated mRNA decay factor.	0.920
LOC111228938	smg6	ENSSDUP00000018286	ENSSDUP00000022545	Uncharacterized protein.	SMG6 nonsense mediated mRNA decay factor.	0.915
LOC111228938	smg7	ENSSDUP00000018286	ENSSDUP00000024189	Uncharacterized protein.	SMG7 nonsense mediated mRNA decay factor.	0.922
LOC111228938	smg8	ENSSDUP00000018286	ENSSDUP00000002460	Uncharacterized protein.	SMG8 nonsense mediated mRNA decay factor.	0.506
LOC111228938	smg9	ENSSDUP00000018286	ENSSDUP00000016259	Uncharacterized protein.	SMG9 nonsense mediated mRNA decay factor.	0.584
LOC111228938	upf3a	ENSSDUP00000018286	ENSSDUP00000013458	Uncharacterized protein.	UPF3A regulator of nonsense mediated mRNA decay.	0.986
LOC111228938	upf3b	ENSSDUP00000018286	ENSSDUP00000007743	Uncharacterized protein.	UPF3B regulator of nonsense mediated mRNA decay.	0.987
UPF1	LOC111228938	ENSSDUP00000013281	ENSSDUP00000018286	UPF1 RNA helicase and ATPase.	Uncharacterized protein.	0.900
UPF1	rbm8a	ENSSDUP00000013281	ENSSDUP00000008075	UPF1 RNA helicase and ATPase.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.950
UPF1	smg1	ENSSDUP00000013281	ENSSDUP00000025222	UPF1 RNA helicase and ATPase.	SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.	0.993
UPF1	smg5	ENSSDUP00000013281	ENSSDUP00000009727	UPF1 RNA helicase and ATPase.	SMG5 nonsense mediated mRNA decay factor.	0.920
UPF1	smg6	ENSSDUP00000013281	ENSSDUP00000022545	UPF1 RNA helicase and ATPase.	SMG6 nonsense mediated mRNA decay factor.	0.915
UPF1	smg7	ENSSDUP00000013281	ENSSDUP00000024189	UPF1 RNA helicase and ATPase.	SMG7 nonsense mediated mRNA decay factor.	0.922
UPF1	smg8	ENSSDUP00000013281	ENSSDUP00000002460	UPF1 RNA helicase and ATPase.	SMG8 nonsense mediated mRNA decay factor.	0.506
UPF1	smg9	ENSSDUP00000013281	ENSSDUP00000016259	UPF1 RNA helicase and ATPase.	SMG9 nonsense mediated mRNA decay factor.	0.584
UPF1	upf3a	ENSSDUP00000013281	ENSSDUP00000013458	UPF1 RNA helicase and ATPase.	UPF3A regulator of nonsense mediated mRNA decay.	0.986
UPF1	upf3b	ENSSDUP00000013281	ENSSDUP00000007743	UPF1 RNA helicase and ATPase.	UPF3B regulator of nonsense mediated mRNA decay.	0.987