STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nr2f1Nuclear receptor subfamily 2, group F, member 1a. (443 aa)    
Predicted Functional Partners:
ncor1
Nuclear receptor corepressor 1.
    
 0.594
LOC111228814
Plasmalemma vesicle associated protein a.
    
 0.579
ncor2
Nuclear receptor corepressor 2.
    
 0.556
med1
Mediator complex subunit 1.
    
  0.508
LOC111225461
Fatty acid binding protein 7, brain, a; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
    
 0.463
FABP7
Fatty acid binding protein 7; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
    
 0.463
ano8
Anoctamin.
      
 0.440
hey2
Hes-related family bHLH transcription factor with YRPW motif 2.
    
 
 0.435
ENSSDUP00000008290
BolA family member 1; Belongs to the BolA/IbaG family.
      
 0.422
ENSSDUP00000008307
BolA family member 1; Belongs to the BolA/IbaG family.
      
 0.422
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.