STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111239303Nanog homeobox. (417 aa)    
Predicted Functional Partners:
LOC111238932
POU domain protein.
  
  
 0.732
ENSSDUP00000008954
POU domain, class 5, transcription factor 3.
  
  
 0.716
LOC111228180
T-box transcription factor Ta.
     
 0.567
tbxt
T-box transcription factor Tb.
     
 0.549
LOC111223823
Kruppel-like factor 17.
    
 
 0.494
LOC111227512
Uncharacterized protein.
  
     0.441
LOC111227535
Uncharacterized protein.
  
     0.435
LOC111231339
ZP domain-containing protein.
  
     0.433
ENSSDUP00000004600
Uncharacterized protein.
  
     0.430
ENSSDUP00000010745
Fork-head domain-containing protein.
  
 
 0.422
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.