LOC111220637 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111220637

Exportin 1 (CRM1 homolog, yeast) b. (1071 aa)

Predicted Functional Partners:

ran

0.988

nup214

0.949

LOC111218510

0.916

xpo1

0.900

adgrd1

0.889

ranbp1

0.879

snupn

0.872

nup98

0.730

nmd3

0.714

nxf1

0.708

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC111218510	LOC111220637	ENSSDUP00000018015	ENSSDUP00000024418	RAN binding protein 2.	Exportin 1 (CRM1 homolog, yeast) b.	0.916
LOC111218510	adgrd1	ENSSDUP00000018015	ENSSDUP00000031584	RAN binding protein 2.	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	0.983
LOC111218510	nmd3	ENSSDUP00000018015	ENSSDUP00000033028	RAN binding protein 2.	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.483
LOC111218510	nup214	ENSSDUP00000018015	ENSSDUP00000016901	RAN binding protein 2.	Nup214_FG domain-containing protein.	0.999
LOC111218510	nup98	ENSSDUP00000018015	ENSSDUP00000009014	RAN binding protein 2.	Nucleoporin 98.	0.997
LOC111218510	nxf1	ENSSDUP00000018015	ENSSDUP00000023805	RAN binding protein 2.	Zgc:153681.	0.992
LOC111218510	ran	ENSSDUP00000018015	ENSSDUP00000020401	RAN binding protein 2.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.983
LOC111218510	ranbp1	ENSSDUP00000018015	ENSSDUP00000003127	RAN binding protein 2.	RAN binding protein 1.	0.544
LOC111218510	snupn	ENSSDUP00000018015	ENSSDUP00000032649	RAN binding protein 2.	Snurportin 1.	0.717
LOC111218510	xpo1	ENSSDUP00000018015	ENSSDUP00000001086	RAN binding protein 2.	Exportin 1 (CRM1 homolog, yeast) a.	0.916
LOC111220637	LOC111218510	ENSSDUP00000024418	ENSSDUP00000018015	Exportin 1 (CRM1 homolog, yeast) b.	RAN binding protein 2.	0.916
LOC111220637	adgrd1	ENSSDUP00000024418	ENSSDUP00000031584	Exportin 1 (CRM1 homolog, yeast) b.	Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family.	0.889
LOC111220637	nmd3	ENSSDUP00000024418	ENSSDUP00000033028	Exportin 1 (CRM1 homolog, yeast) b.	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.714
LOC111220637	nup214	ENSSDUP00000024418	ENSSDUP00000016901	Exportin 1 (CRM1 homolog, yeast) b.	Nup214_FG domain-containing protein.	0.949
LOC111220637	nup98	ENSSDUP00000024418	ENSSDUP00000009014	Exportin 1 (CRM1 homolog, yeast) b.	Nucleoporin 98.	0.730
LOC111220637	nxf1	ENSSDUP00000024418	ENSSDUP00000023805	Exportin 1 (CRM1 homolog, yeast) b.	Zgc:153681.	0.708
LOC111220637	ran	ENSSDUP00000024418	ENSSDUP00000020401	Exportin 1 (CRM1 homolog, yeast) b.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.988
LOC111220637	ranbp1	ENSSDUP00000024418	ENSSDUP00000003127	Exportin 1 (CRM1 homolog, yeast) b.	RAN binding protein 1.	0.879
LOC111220637	snupn	ENSSDUP00000024418	ENSSDUP00000032649	Exportin 1 (CRM1 homolog, yeast) b.	Snurportin 1.	0.872
LOC111220637	xpo1	ENSSDUP00000024418	ENSSDUP00000001086	Exportin 1 (CRM1 homolog, yeast) b.	Exportin 1 (CRM1 homolog, yeast) a.	0.900