STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111230313Parvalbumin 6; Belongs to the parvalbumin family. (109 aa)    
Predicted Functional Partners:
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.680
CASK-2
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.680
LOC111216952
Somatostatin.
      
 0.656
mecp2
Methyl CpG binding protein 2.
     
 0.647
Bdnf
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
      
 0.645
gal
Galanin/GMAP prepropeptide.
      
 0.636
zbtb20
Zinc finger and BTB domain containing 20.
    
 0.629
Mbp
Myelin basic protein b.
    
 
 0.617
dcx
Uncharacterized protein.
     
 0.612
LOC111234100
IF rod domain-containing protein; Belongs to the intermediate filament family.
    
 
 0.608
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.