STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111228946Secretogranin II (chromogranin C), b. (602 aa)    
Predicted Functional Partners:
LOC111227205
Relaxin 3a.
  
   
 0.640
ENSSDUP00000031756
NMU domain-containing protein.
   
  
 0.570
ENSSDUP00000003395
Relaxin 3b.
      
 0.564
chga
Chromogranin A.
   
 
 0.563
LOC111230848
Oxytocin; Belongs to the vasopressin/oxytocin family.
   
  
 0.562
scg5
Secretogranin V.
   
  
 0.493
scg3
Secretogranin III.
   
  
 0.489
cpe
Carboxypeptidase E.
   
  
 0.478
LOC111221960
UPF0258 domain-containing protein.
  
    0.478
tac3
Tachykinin 3a.
      
 0.472
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.