STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111223183Protein S100; Belongs to the S-100 family. (100 aa)    
Predicted Functional Partners:
LOC111225366
Annexin.
   
 0.991
LOC111228497
Annexin.
   
 0.991
Ahnak
PDZ domain-containing protein.
   
 0.964
LOC111238254
Uncharacterized protein.
   
 0.963
anxa1
Annexin.
   
 0.958
hltf
Helicase-like transcription factor.
   
 
 0.888
plg
Plasminogen; Belongs to the peptidase S1 family.
    
 0.780
LOC111220056
Uncharacterized protein.
   
 0.661
plat
Plasminogen activator, tissue.
   
 0.661
plau
Plasminogen activator, urokinase a; Belongs to the peptidase S1 family.
   
 0.661
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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