fbln5 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

fbln5

Fibulin 5. (426 aa)

Predicted Functional Partners:

LOC111231064

0.770

ENSSDUP00000013582

0.715

LOC111220595

0.668

ENSSDUP00000011831

0.626

ENSSDUP00000011840

0.626

cfp

0.599

vtn

0.583

LOC111217133

0.577

LOC111219699

0.547

MFAP4

0.547

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSDUP00000011831	ENSSDUP00000013582	ENSSDUP00000011831	ENSSDUP00000013582	Microfibril associated protein 2.	Microfibril associated protein 5.	0.728
ENSSDUP00000011831	LOC111217133	ENSSDUP00000011831	ENSSDUP00000026913	Microfibril associated protein 2.	Vitronectin b.	0.449
ENSSDUP00000011831	LOC111219699	ENSSDUP00000011831	ENSSDUP00000016062	Microfibril associated protein 2.	Fibrinogen C-terminal domain-containing protein.	0.492
ENSSDUP00000011831	LOC111231064	ENSSDUP00000011831	ENSSDUP00000016166	Microfibril associated protein 2.	Lysyl oxidase-like 5b.	0.553
ENSSDUP00000011831	MFAP4	ENSSDUP00000011831	ENSSDUP00000020818	Microfibril associated protein 2.	Microfibril associated protein 4.	0.492
ENSSDUP00000011831	fbln5	ENSSDUP00000011831	ENSSDUP00000025180	Microfibril associated protein 2.	Fibulin 5.	0.626
ENSSDUP00000011831	vtn	ENSSDUP00000011831	ENSSDUP00000003911	Microfibril associated protein 2.	Vitronectin a.	0.449
ENSSDUP00000011840	ENSSDUP00000013582	ENSSDUP00000011840	ENSSDUP00000013582	Uncharacterized protein.	Microfibril associated protein 5.	0.728
ENSSDUP00000011840	LOC111217133	ENSSDUP00000011840	ENSSDUP00000026913	Uncharacterized protein.	Vitronectin b.	0.449
ENSSDUP00000011840	LOC111219699	ENSSDUP00000011840	ENSSDUP00000016062	Uncharacterized protein.	Fibrinogen C-terminal domain-containing protein.	0.492
ENSSDUP00000011840	LOC111231064	ENSSDUP00000011840	ENSSDUP00000016166	Uncharacterized protein.	Lysyl oxidase-like 5b.	0.553
ENSSDUP00000011840	MFAP4	ENSSDUP00000011840	ENSSDUP00000020818	Uncharacterized protein.	Microfibril associated protein 4.	0.492
ENSSDUP00000011840	fbln5	ENSSDUP00000011840	ENSSDUP00000025180	Uncharacterized protein.	Fibulin 5.	0.626
ENSSDUP00000011840	vtn	ENSSDUP00000011840	ENSSDUP00000003911	Uncharacterized protein.	Vitronectin a.	0.449
ENSSDUP00000013582	ENSSDUP00000011831	ENSSDUP00000013582	ENSSDUP00000011831	Microfibril associated protein 5.	Microfibril associated protein 2.	0.728
ENSSDUP00000013582	ENSSDUP00000011840	ENSSDUP00000013582	ENSSDUP00000011840	Microfibril associated protein 5.	Uncharacterized protein.	0.728
ENSSDUP00000013582	LOC111219699	ENSSDUP00000013582	ENSSDUP00000016062	Microfibril associated protein 5.	Fibrinogen C-terminal domain-containing protein.	0.501
ENSSDUP00000013582	LOC111220595	ENSSDUP00000013582	ENSSDUP00000006784	Microfibril associated protein 5.	Lysyl oxidase-like 1.	0.522
ENSSDUP00000013582	LOC111231064	ENSSDUP00000013582	ENSSDUP00000016166	Microfibril associated protein 5.	Lysyl oxidase-like 5b.	0.535
ENSSDUP00000013582	MFAP4	ENSSDUP00000013582	ENSSDUP00000020818	Microfibril associated protein 5.	Microfibril associated protein 4.	0.501