STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tanc1Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1b. (1768 aa)    
Predicted Functional Partners:
LOC111224554
Ras association domain family member 3.
      
 0.589
riok3
Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
    
 
 0.540
agap1
ArfGAP with GTPase domain, ankyrin repeat and PH domain 1.
    
 0.522
AGAP2
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2.
    
 0.522
agap2
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2.
    
 0.522
agap3
ArfGAP with GTPase domain, ankyrin repeat and PH domain 3.
    
 0.522
PPP6C
Serine/threonine-protein phosphatase.
    
 0.511
LOC111221153
Serine/threonine-protein phosphatase.
    
 0.511
ppp6r2
Protein phosphatase 6, regulatory subunit 2b.
    
 0.477
LOC111224522
Protein phosphatase 6, regulatory subunit 2a.
    
 0.477
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.