STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111229106Zgc:110366. (285 aa)    
Predicted Functional Partners:
mtr
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 0.730
mtrr
5-methyltetrahydrofolate-homocysteine methyltransferase reductase.
     
 0.723
gclc
Glutamate-cysteine ligase, catalytic subunit.
   
 0.687
LOC111228095
Metabolism of cobalamin associated D.
    
 0.661
LOC111222728
Zgc:92335.
    
 0.661
ENSSDUP00000001339
Aldo_ket_red domain-containing protein.
  
 0.443
KCNAB3
Potassium voltage-gated channel subfamily A regulatory beta subunit 3.
  
 0.443
KCNAB1
Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.
  
0.443
LOC111239150
Aldo_ket_red domain-containing protein.
  
 0.443
LOC111224011
Potassium voltage-gated channel, shaker-related subfamily, beta member 2 a.
  
 0.443
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.