STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111216661Cytochrome P450, family 4, subfamily V, polypeptide 8; Belongs to the cytochrome P450 family. (510 aa)    
Predicted Functional Partners:
lss
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
  
 0.730
sqle
Squalene epoxidase a.
  
 0.727
LOC111232752
Phosphoethanolamine methyltransferase.
   
 0.682
aasdh
Aminoadipate-semialdehyde dehydrogenase.
  
 0.672
sc5d
Sterol-C5-desaturase; Belongs to the sterol desaturase family.
   
 0.602
LOC111231932
Hydroxysteroid (17-beta) dehydrogenase 7.
    
 
 0.569
HSD17B7
Hydroxysteroid 17-beta dehydrogenase 7.
    
 
 0.569
fbh1
F-box DNA helicase 1.
      
 0.564
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.545
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.510
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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