STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111231796Carn_acyltransf domain-containing protein. (625 aa)    
Predicted Functional Partners:
rpp14
Ribonuclease P/MRP 14 subunit.
   
 0.754
LOC111231890
Sterol carrier protein 2b.
   
 0.735
scp2
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.735
acox1
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 0.680
hsdl2
Hydroxysteroid dehydrogenase like 2.
   
 0.679
pex14
Peroxisomal biogenesis factor 14.
    
 0.578
pex5l
Peroxisomal biogenesis factor 5-like a.
    
 0.552
ENSSDUP00000008186
Peroxisomal biogenesis factor 5-like b.
    
 0.552
pex5
Peroxisomal biogenesis factor 5.
    
 0.552
LOC111222141
Solute carrier family 25 member 20; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
 
 0.542
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.