LOC111219032 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC111219032

PL48 domain-containing protein. (715 aa)

Predicted Functional Partners:

fau

0.779

LOC111218510

0.514

gle1

0.472

GRXCR2

0.468

arl6ip1

0.456

rps15a

0.456

rps24

0.441

rps28

0.433

LOC111229314

0.431

rps15

0.431

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GRXCR2	LOC111219032	ENSSDUP00000029447	ENSSDUP00000026135	Glutaredoxin and cysteine rich domain containing 2.	PL48 domain-containing protein.	0.468
LOC111218510	LOC111219032	ENSSDUP00000018015	ENSSDUP00000026135	RAN binding protein 2.	PL48 domain-containing protein.	0.514
LOC111218510	gle1	ENSSDUP00000018015	ENSSDUP00000019219	RAN binding protein 2.	GLE1 RNA export mediator.	0.973
LOC111219032	GRXCR2	ENSSDUP00000026135	ENSSDUP00000029447	PL48 domain-containing protein.	Glutaredoxin and cysteine rich domain containing 2.	0.468
LOC111219032	LOC111218510	ENSSDUP00000026135	ENSSDUP00000018015	PL48 domain-containing protein.	RAN binding protein 2.	0.514
LOC111219032	LOC111229314	ENSSDUP00000026135	ENSSDUP00000011713	PL48 domain-containing protein.	Anti-silencing function 1B histone chaperone.	0.431
LOC111219032	arl6ip1	ENSSDUP00000026135	ENSSDUP00000020191	PL48 domain-containing protein.	ADP-ribosylation factor-like 6 interacting protein 1.	0.456
LOC111219032	fau	ENSSDUP00000026135	ENSSDUP00000013032	PL48 domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.779
LOC111219032	gle1	ENSSDUP00000026135	ENSSDUP00000019219	PL48 domain-containing protein.	GLE1 RNA export mediator.	0.472
LOC111219032	rps15	ENSSDUP00000026135	ENSSDUP00000017559	PL48 domain-containing protein.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.431
LOC111219032	rps15a	ENSSDUP00000026135	ENSSDUP00000028982	PL48 domain-containing protein.	Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.	0.456
LOC111219032	rps24	ENSSDUP00000026135	ENSSDUP00000014840	PL48 domain-containing protein.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.441
LOC111219032	rps28	ENSSDUP00000026135	ENSSDUP00000017408	PL48 domain-containing protein.	Ribosomal protein S28.	0.433
LOC111229314	LOC111219032	ENSSDUP00000011713	ENSSDUP00000026135	Anti-silencing function 1B histone chaperone.	PL48 domain-containing protein.	0.431
arl6ip1	LOC111219032	ENSSDUP00000020191	ENSSDUP00000026135	ADP-ribosylation factor-like 6 interacting protein 1.	PL48 domain-containing protein.	0.456
arl6ip1	fau	ENSSDUP00000020191	ENSSDUP00000013032	ADP-ribosylation factor-like 6 interacting protein 1.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
arl6ip1	rps15	ENSSDUP00000020191	ENSSDUP00000017559	ADP-ribosylation factor-like 6 interacting protein 1.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.996
arl6ip1	rps15a	ENSSDUP00000020191	ENSSDUP00000028982	ADP-ribosylation factor-like 6 interacting protein 1.	Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.	0.812
arl6ip1	rps24	ENSSDUP00000020191	ENSSDUP00000014840	ADP-ribosylation factor-like 6 interacting protein 1.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.995
arl6ip1	rps28	ENSSDUP00000020191	ENSSDUP00000017408	ADP-ribosylation factor-like 6 interacting protein 1.	Ribosomal protein S28.	0.996