STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traddTnfrsf1a-associated via death domain. (292 aa)    
Predicted Functional Partners:
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
   
 0.999
LOC111240026
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.998
tnfrsf1a
Tumor necrosis factor receptor superfamily, member 1a.
    
 0.998
fadd
Uncharacterized protein.
   
 0.998
LOC111217845
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.998
LOC111218362
Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
    
 0.994
casp8
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 0.994
traf3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.984
LOC111232930
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.984
LOC111234415
Baculoviral IAP repeat containing 2.
   
 0.983
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.