STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111234167PDZ and LIM domain 5b. (614 aa)    
Predicted Functional Partners:
LOC111219856
Vinculin b.
   
 0.583
LOC111234345
Vinculin a.
   
 0.583
LOC111222518
Parvin, alpha a.
   
 0.569
parvg
Parvin, gamma.
   
 0.569
parvb
Parvin, beta.
   
 0.569
ret
Proto-oncogene tyrosine-protein kinase receptor Ret; Receptor tyrosine-protein kinase involved in numerous cellular mechanisms including cell proliferation, neuronal navigation, cell migration, and cell differentiation upon binding with glial cell derived neurotrophic factor family ligands.
    
 0.567
ctnna2
Catenin (cadherin-associated protein), alpha 2.
   
 0.541
ENSSDUP00000008357
Uncharacterized protein.
   
 0.541
ctnnal1
Catenin (cadherin-associated protein), alpha-like 1.
   
 0.541
ctnna1
Catenin (cadherin-associated protein), alpha 1.
   
 0.541
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.