STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111230415Solute carrier family 25 member 37; Belongs to the mitochondrial carrier (TC 2.A.29) family. (336 aa)    
Predicted Functional Partners:
nars2
Asparaginyl-tRNA synthetase 2, mitochondrial.
 
      0.895
fxn
Frataxin.
    
 
 0.653
abcb10
ATP-binding cassette, sub-family B (MDR/TAP), member 10.
   
  
 0.643
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
  
 0.639
abcb7
ATP-binding cassette, sub-family B (MDR/TAP), member 7.
    
 
 0.600
LOC111219041
5-aminolevulinate synthase.
   
  
 0.573
arih1
RBR-type E3 ubiquitin transferase.
 
      0.553
glrx5
Glutaredoxin 5 homolog (S. cerevisiae).
   
  
 0.539
cpox
Coproporphyrinogen oxidase.
      
 0.510
ppox
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
   
  
 0.469
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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