STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cunh12orf45Si:dkey-48p11.3. (152 aa)    
Predicted Functional Partners:
rpap2
RNA polymerase II associated protein 2.
   
   0.912
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.711
mipol1
Uncharacterized protein.
   
    0.596
ruvbl2
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
   
 
 0.533
LOC111237209
Thioesterase superfamily member 4.
      
 0.530
znhit3
Zinc finger, HIT-type containing 3.
      
 0.465
GNAZ
G protein subunit alpha z.
    
 0.445
LOC111233827
Palmdelphin a.
     
 0.435
gak
Cyclin G associated kinase.
    
 0.435
PALMD
Palmdelphin.
     
 0.435
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.