STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nischNischarin. (1523 aa)    
Predicted Functional Partners:
LOC111223701
Erythropoietin receptor.
      
 0.594
STMN1
Stathmin; Belongs to the stathmin family.
      
 0.583
LOC111219857
Rho family GTPase 2.
    
  0.548
LOC111217510
Rho family GTPase 2.
    
  0.548
rnd3
Rho family GTPase 3a.
    
  0.483
LOC111219083
Rho family GTPase 1b.
    
  0.483
RND1
Rho family GTPase 1.
    
  0.483
LOC111222068
Polybromo 1.
      
 0.470
ENSSDUP00000015520
BRCA2 DNA repair associated.
      
 0.465
LOC111238302
Phospholipase.
     
 0.454
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.