STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acer3Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid. (282 aa)    
Predicted Functional Partners:
sphk2
Sphingosine kinase 2.
    
 0.948
SPHK1
Sphingosine kinase 1.
    
 0.948
SPHK1-2
Sphingosine kinase 1.
    
 0.948
kdsr
3-ketodihydrosphingosine reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.935
LOC111232177
Phospholipid phosphatase 2b.
     
 0.935
plpp2
Phospholipid phosphatase 2a.
     
 0.935
LOC111225386
acidPPc domain-containing protein.
     
 0.930
SGPP2
Sphingosine-1-phosphate phosphatase 2.
     
 0.930
LOC111239742
Si:ch211-212g7.6.
     
 0.930
degs1
Delta(4)-desaturase, sphingolipid 1.
   
 
 0.925
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.