STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111235451CXXC finger protein 1a. (637 aa)    
Predicted Functional Partners:
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
   
 0.961
rbbp5
Retinoblastoma binding protein 5.
    
 0.957
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 0.919
LOC111222846
WD repeat domain 82.
   
 0.899
setd1b
SET domain containing 1B, histone lysine methyltransferase a.
   
 0.881
setd1a
SET domain containing 1A, histone lysine methyltransferase.
   
 0.881
ENSSDUP00000030815
RRM domain-containing protein.
   
 0.881
ENSSDUP00000018324
WD_REPEATS_REGION domain-containing protein.
   
 
 0.849
LOC111237447
WD_REPEATS_REGION domain-containing protein.
   
 
 0.658
wdr5
WD repeat domain 5.
   
 
 0.658
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.