STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
irf8Interferon regulatory factor 8. (552 aa)    
Predicted Functional Partners:
LOC111238387
Spi-1 proto-oncogene b.
   
 
 0.751
mysm1
Myb-like, SWIRM and MPN domains 1.
    
 
 0.607
pbdc1
Polysaccharide biosynthesis domain containing 1.
      
 0.593
cd83
Uncharacterized protein.
   
  
 0.588
TNFRSF11B
TNF receptor superfamily member 11b.
   
  
 0.576
LOC111234299
Interferon regulatory factor.
   
0.564
csf3r
Colony stimulating factor 3 receptor (granulocyte).
   
 0.526
tlr5
TIR domain-containing protein; Belongs to the Toll-like receptor family.
   
 
 0.516
EGR2
Early growth response 2.
    
 0.481
mpeg1
Macrophage expressed 1, tandem duplicate 2.
   
  
 0.461
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.