STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ush1cUsher syndrome 1C. (824 aa)    
Predicted Functional Partners:
LOC111220587
Cadherin-related 23.
   
 
 0.918
LOC111220275
Usher syndrome 1Gb (autosomal recessive).
    
 0.893
anks4b
Ankyrin repeat and sterile alpha motif domain containing 4B.
    
 0.893
LOC111227116
Usher syndrome 1Ga (autosomal recessive).
    
 0.893
ENSSDUP00000013019
Uncharacterized protein.
   
 
 0.875
myo7a
Myosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.689
LOC111217060
Myosin VIIAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.689
pcdh15
Protocadherin-related 15a.
   
 
 0.686
LOC111219615
Protocadherin-related 15b.
   
 
 0.686
ush2a
Usher syndrome 2A (autosomal recessive, mild).
    
 
 0.672
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.