STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cunh9orf78Zgc:103692. (291 aa)    
Predicted Functional Partners:
slu7
SLU7 homolog, splicing factor.
   
 
 0.932
nkap
NFKB activating protein.
   
 
  0.897
syf2
SYF2 pre-mRNA-splicing factor.
   
 
 0.894
prpf8
Pre-mRNA processing factor 8.
    
 
 0.889
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.881
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.879
cwc22
CWC22 spliceosome associated protein homolog.
    
 0.874
fam50a
Family with sequence similarity 50 member A.
    
 0.858
Prkrip1
PRKR interacting protein 1.
   
 
 0.850
med22
Mediator complex subunit 22.
   
  
 0.850
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.