STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
meis1Meis homeobox 1 b. (399 aa)    
Predicted Functional Partners:
LOC111222587
Pre-B-cell leukemia homeobox 2.
   
0.662
LOC111239007
Pre-B-cell leukemia homeobox 1a.
   
0.662
LOC111229341
Homeobox domain-containing protein.
   
0.662
LOC111226989
Pre-B-cell leukemia transcription factor 4.
   
0.662
pbx3
Homeobox domain-containing protein.
   
0.662
LOC111231978
Homeobox domain-containing protein.
   
0.662
LOC111227966
Homeobox B13a.
    
 
 0.589
tshz3
Teashirt zinc finger homeobox 3b.
   
 0.586
LOC111228709
Teashirt zinc finger homeobox 3a.
   
 0.586
yap1
Yes-associated protein 1.
    
 0.582
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.