STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111228592PDZ and LIM domain 2 (mystique). (367 aa)    
Predicted Functional Partners:
LOC111231492
Sorbin and SH3 domain containing 3.
 
  
 0.604
LOC111222518
Parvin, alpha a.
   
 0.569
parvg
Parvin, gamma.
   
 0.569
parvb
Parvin, beta.
   
 0.569
ctnna2
Catenin (cadherin-associated protein), alpha 2.
   
 0.541
ENSSDUP00000008357
Uncharacterized protein.
   
 0.541
ctnnal1
Catenin (cadherin-associated protein), alpha-like 1.
   
 0.541
ctnna1
Catenin (cadherin-associated protein), alpha 1.
   
 0.541
LOC111219856
Vinculin b.
   
 0.541
LOC111234345
Vinculin a.
   
 0.541
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.