STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp38Ubiquitin specific peptidase 38; Belongs to the peptidase C19 family. (1008 aa)    
Predicted Functional Partners:
wdr48
WD repeat domain 48b.
   
 0.918
rps27a
Ribosomal protein S27a.
    
 0.907
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.827
LOC111228782
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.827
ubb
Uncharacterized protein.
    
 0.802
ubc
Uncharacterized protein.
    
 0.802
fancd2
FA complementation group D2.
    
 0.748
LOC111216871
DM1 locus, WD repeat containing.
   
 0.740
LOC111237863
WD repeat domain 20b.
   
 0.740
ENSSDUP00000013246
Uncharacterized protein.
   
 0.740
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.