STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cdca5Uncharacterized protein. (268 aa)    
Predicted Functional Partners:
espl1
Extra spindle pole bodies like 1, separase.
   
 
 0.914
smc3
Structural maintenance of chromosomes protein.
   
 0.899
RBM20
RNA binding motif protein 20.
   
 0.870
nuf2
UF2 component of NDC80 kinetochore complex.
   
  
 0.848
LOC111219567
WAPL cohesin release factor b.
    
 0.844
wapl
WAPL cohesin release factor a.
    
 0.844
cdc45
CDC45 cell division cycle 45 homolog (S. cerevisiae).
   
  
 0.839
cdca3
Si:ch211-69g19.2.
   
  
 0.832
SGO1
Shugoshin_C domain-containing protein.
   
 
 0.824
LOC111229734
Structural maintenance of chromosomes protein.
   
 0.805
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.