STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx46DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (953 aa)    
Predicted Functional Partners:
sf3a3
Splicing factor 3a, subunit 3.
   
 0.998
sf3a2
Splicing factor 3a, subunit 2.
    
 0.998
sf3b1
Splicing factor 3b, subunit 1.
   
 0.998
sf3a1
Splicing factor 3a, subunit 1.
   
 0.998
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.997
sf3b3
Splicing factor 3b, subunit 3.
   
 0.997
phf5a
PHD finger protein 5A.
    
 0.996
Snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.996
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.994
sf3b2
Splicing factor 3b, subunit 2.
   
 0.981
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.