STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psme3ip1Family with sequence similarity 192 member A. (260 aa)    
Predicted Functional Partners:
gsc
Goosecoid.
    
   0.908
psme3
Proteasome activator subunit 3.
    
 
 0.844
cactin
Cactin.
    
 
 0.821
prpf8
Pre-mRNA processing factor 8.
    
   0.817
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
   0.817
xab2
XPA binding protein 2.
    
   0.817
cmtr2
Cap methyltransferase 2.
      
 0.647
cog4
Component of oligomeric golgi complex 4.
      
 0.602
cmss1
Cms1 ribosomal small subunit homolog.
      
 0.597
exosc6
Exosome component 6.
   
  
 0.593
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.