STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111228058Tetratricopeptide repeat domain 12. (406 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.867
ENSSDUP00000029385
Uncharacterized protein.
 
      0.802
ENSSDUP00000029395
annotation not available
 
      0.802
hsp90ab1
Heat shock protein 90, alpha (cytosolic), class B member 1.
   
 0.753
LOC111235810
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.
   
 0.753
LOC111235802
Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.
   
 0.753
trap1
TNF receptor-associated protein 1.
   
 0.753
LOC111238487
TSC complex subunit 1b.
   
 0.753
ENSSDUP00000016177
Uncharacterized protein.
   
 0.753
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 
 0.686
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.