STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmc4Uncharacterized protein. (64 aa)    
Predicted Functional Partners:
mysm1
Myb-like, SWIRM and MPN domains 1.
    
 0.972
LOC111222703
Lysine (K)-specific demethylase 6A, like.
    
 0.689
kdm6a
Lysine (K)-specific demethylase 6A.
    
 0.689
ENSSDUP00000021538
Lysine (K)-specific demethylase 6B, b.
    
 0.689
kdm6b
Lysine (K)-specific demethylase 6B, a.
    
 0.689
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.675
cmc2
COX assembly mitochondrial protein.
     
 0.665
rps27a
Ribosomal protein S27a.
   
  0.658
tp53bp1
Tumor protein p53 binding protein, 1.
    
 0.646
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
    
 0.643
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.