STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rapgef4Rap guanine nucleotide exchange factor (GEF) 4. (985 aa)    
Predicted Functional Partners:
LOC111221706
Mitogen-activated protein kinase.
     
 0.902
LOC111227590
Mitogen-activated protein kinase.
     
 0.902
LOC111221298
Mitogen-activated protein kinase.
     
 0.902
LOC111218919
Mitogen-activated protein kinase.
     
 0.902
LOC111224692
Mitogen-activated protein kinase.
     
 0.902
LOC111225013
Mitogen-activated protein kinase.
     
 0.902
LOC111228380
Mitogen-activated protein kinase.
     
 0.902
LOC111228847
Zgc:171558.
  
  
 
0.901
LOC111234902
Uncharacterized protein.
    
 0.811
rap1b
Uncharacterized protein.
    
 0.811
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.