STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bbxBBX high mobility group box domain containing. (870 aa)    
Predicted Functional Partners:
bbox1
Butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1.
      
 0.582
KIF18A
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
  
   
 0.537
lap3
Leucine aminopeptidase 3.
      
 0.537
got2
Aspartate aminotransferase.
      
 0.489
LOC111236821
Ataxin 1b.
    
 
 0.456
atxn1
Ataxin 1a.
    
 
 0.456
atxn1l
Ataxin 1-like.
    
 
 0.456
LOC111217411
AXH domain-containing protein.
    
 
 0.456
gtf2a1l
General transcription factor IIA, 1-like.
   
  
 0.446
sin3b
SIN3 transcription regulator family member B.
   
 
 0.440
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.