STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111217609U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (490 aa)    
Predicted Functional Partners:
LOC111236723
Uncharacterized protein.
   
 0.994
LOC111218366
U2 small nuclear RNA auxiliary factor 1.
   
 0.994
sf3b1
Splicing factor 3b, subunit 1.
 
 
 
 0.959
sf1
Splicing factor 1.
   
 
 0.953
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 0.952
snrnp70
Small nuclear ribonucleoprotein 70 (U1).
   
 0.938
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 
 0.936
sf3b3
Splicing factor 3b, subunit 3.
   
 0.936
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.934
sf3b4
Splicing factor 3b, subunit 4.
   
 
 0.934
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.