STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111231888Integrin, alpha 11b; Belongs to the integrin alpha chain family. (1125 aa)    
Predicted Functional Partners:
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.720
LOC111233864
Integrin beta; Belongs to the integrin beta chain family.
   
 0.720
itgb5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.711
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.711
itgb3
Integrin beta; Belongs to the integrin beta chain family.
   
 0.711
LOC111217494
Integrin beta; Belongs to the integrin beta chain family.
   
 0.711
LOC111228090
Integrin beta.
   
 0.699
itgb4
Integrin beta.
   
 0.648
ENSSDUP00000015781
Integrin beta.
   
 0.622
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.596
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.